Open Access article of the day: History in the page

Teasdale, M. D. et al. (2015) Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing. Philos Trans R Soc Lond B Biol Sci. 370:20130379

Parchment_from_goatskin wikipedia

Parchment being prepared from a stretched goatskin

Brief background:  Parchment used to be made from animal skins (see animation here).  Indeed the page sizes used (folio, quarto) were based on the size of a rectangle cut (usually) from sheepskins.

What they’ve done:  Scientists from Dublin and York have taken fragments from two English parchments, one 17th and one 18th century, extracted DNA, sequenced it, and identified its source.

What techniques they used: DNA and proteins from the parchment were extracted and sequenced to identify their origin.

  • DNA sequencing was carried out using what are called Next Generation Sequencing technologies (animation) – incredibly fast sequencing of tiny fragments of DNA, that can be matched to complete genomes that have previously been sequenced and are present in genome databases
  • Protein sequencing was achieved using a technique called MALDI-TOF mass spectrometry: proteins are broken using specific proteases into small fragments that are sized very accurately using this methodology. A computer then identifies what combinations of amino acid each fragment contains, and by comparing to known proteins, and possible fragments that could be produced using that protease, they can be identified.

What they found: Both parchments were shown to come from sheep, and they could tentatively identify the earlier one as a northern hill sheep, and the later one as an ‘improved’ breed that became more widely bred at that time. They managed to get sequence approaching 10% of each whole genome.

Why this is interesting: This is partly a technical proof of principle, that this is possible. Not only was it successful, but the different sheep breeds identified can be linked back to historical events at the time.     

Teasdale F2.large

Figure from paper showing how sequence from parchment matches current sheep breeds (warmer colours = more similar), indicating that they are different from each other (reproduced under Creative Commons license)

Image: Parchment being prepared from a stretched goatskin (Wikimedia Commons)

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